Information for motif35


Reverse Opposite:

p-value:1e-6
log p-value:-1.403e+01
Information Content per bp:1.945
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets204.3 +/- 145.7bp
Average Position of motif in Background611.1 +/- 355.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--ATAAATCCTA----
GATAACATCCTAGTAG

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ATAAATCCTA---
GNNNATTAATCCCTNCN

MA0485.1_Hoxc9/Jaspar

Match Rank:3
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCCTA
GGCCATAAATCAC-

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCCTA
GGCCATAAATCA--

MA0594.1_Hoxa9/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATAAATCCTA
GCCATAAATCA--

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCCTA
GGCCATAAATCA--

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATAAATCCTA---
GANNATTAATCCCTNNN

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATAAATCCTA---
NNNAATTAATCCCCNCN

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATAAATCCTA----
NNNATTAATCCGNTTNA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ATAAATCCTA
--TAATCCCN