Information for motif39


Reverse Opposite:

p-value:1e-4
log p-value:-1.046e+01
Information Content per bp:1.940
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif10.11%
Number of Background Sequences with motif153.2
Percentage of Background Sequences with motif6.69%
Average Position of motif in Targets373.0 +/- 319.1bp
Average Position of motif in Background484.3 +/- 368.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTTTGTC
-CTTTGT-

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTGTC-----
ANTCCTTTGTCTNNNN

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GCTTTGTC--
CCTTTGTTTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCTTTGTC
CCWTTGTY

MA0515.1_Sox6/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCTTTGTC--
CCATTGTTTT

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTTTGTC
CCTTTGTT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTTTGTC--
CCATTGTTNY

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GCTTTGTC-----
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCTTTGTC-----
NNNTCCTTTGTTCTNNN

MA0078.1_Sox17/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCTTTGTC
CTCATTGTC