Information for motif40


Reverse Opposite:

p-value:1e-4
log p-value:-1.033e+01
Information Content per bp:1.767
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif24.6
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets284.7 +/- 283.3bp
Average Position of motif in Background538.2 +/- 383.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0024.2_E2F1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTCTCGCTC-
CCTCCCGCCCN

MA0471.1_E2F6/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTCGCTC
NCTTCCCGCCC

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTCTCGCTC-
GSCTGTCACTCA

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTCTCGCTC--
ACCACTCTCGGTCAC

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTCGCTC--
NNAATTCTCGNTNAN

MA0469.1_E2F3/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCTCGCTC------
-CTCCCGCCCCCACTC

MA0162.2_EGR1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCTCTCGCTC-
CCCCCGCCCCCGCC

MA0470.1_E2F4/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTCGCTC
NNTTCCCGCCC

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTCTCGCTC--
NCTGTCAATCAN

PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCTCTCGCTC--
ACTTTCACTTTC