Information for motif42


Reverse Opposite:

p-value:1e-4
log p-value:-9.428e+00
Information Content per bp:1.530
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets382.8 +/- 291.1bp
Average Position of motif in Background511.0 +/- 333.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0131.1_HINFP/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACGGAGGT--
GCGGACGTTN

ETS(ETS)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACGGAGGT
AACCGGAAGT

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACGGAGGT
ANCCGGAAGT

MA0136.1_ELF5/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ACGGAGGT-
AAGGAAGTA

PB0011.1_Ehf_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ACGGAGGT--
AGGACCCGGAAGTAA

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACGGAGGT
-CGGAGC-

MA0062.2_GABPA/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACGGAGGT---
CCGGAAGTGGC

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACGGAGGT-
RCCGGAAGTD

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACGGAGGT
NACCGGAAGT

PB0020.1_Gabpa_1/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----ACGGAGGT----
CAATACCGGAAGTGTAA