Information for motif45


Reverse Opposite:

p-value:1e-4
log p-value:-9.309e+00
Information Content per bp:1.981
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets201.1 +/- 103.5bp
Average Position of motif in Background320.0 +/- 42.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGGCCGGGC---
NAGANTGGCGGGGNGNA

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGCTGGCCGGGC----
--ATGCCCGGGCATGT

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCTGGCCGGGC-
-GGGGGCGGGGCC

MA0146.2_Zfx/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGCTGGCCGGGC----
--CAGGCCNNGGCCNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGCCGGGC
TWGTCTGV------

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCTGGCCGGGC
NGCTN-------

MA0516.1_SP2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GGCTGGCCGGGC
GGGNGGGGGCGGGGC

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGCTGGCCGGGC
--TTGGCA----

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGGCCGGGC
NGTAGGTTGGCATNNN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GGCTGGCCGGGC
CTGTCTGG------