Information for motif46


Reverse Opposite:

p-value:1e-3
log p-value:-7.708e+00
Information Content per bp:1.530
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets203.1 +/- 156.6bp
Average Position of motif in Background467.9 +/- 303.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACAGCAACAG
SCCTAGCAACAG

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ACAGCAACAG--
CAAACAACAACACCT

MA0510.1_RFX5/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAACAG-
CTCCCTGGCAACAGC

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAACAG-
CCGCATAGCAACGGA

MA0133.1_BRCA1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ACAGCAACAG
---ACAACAC

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCAACAG
CACAGN-----

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACAGCAACAG
CCAGGAACAG

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAACAG-
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.60
Offset:-8
Orientation:forward strand
Alignment:--------ACAGCAACAG-----
TGTGACCCTTAGCAACCGATTAA

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----ACAGCAACAG
ATGTCACAACAACAC