Information for motif9


Reverse Opposite:

p-value:1e-12
log p-value:-2.770e+01
Information Content per bp:1.825
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif5.41%
Number of Background Sequences with motif40.5
Percentage of Background Sequences with motif1.77%
Average Position of motif in Targets382.6 +/- 311.9bp
Average Position of motif in Background508.7 +/- 410.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAACATTGGG
GAACAATGGN

MA0077.1_SOX9/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAACATTGGG
GAACAATGG-

MA0515.1_Sox6/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAACATTGGG
AAAACAATGG-

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AAACATTGGG----
NNTNNACAATGGGANNN

MA0143.3_Sox2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAACATTGGG
-AACAAAGG-

MA0040.1_Foxq1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AAACATTGGG
AATAAACAATN--

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----AAACATTGGG
NNTNNCAATATTAG-

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------AAACATTGGG
AACACCAAAACAAAGGA

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AAACATTGGG
AAATAAACA-----

MA0153.1_HNF1B/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AAACATTGGG
GTTAAATATTAA-