Information for motif1


Reverse Opposite:

p-value:1e-31
log p-value:-7.294e+01
Information Content per bp:1.780
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets420.2 +/- 391.7bp
Average Position of motif in Background1000.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0077.1_Spdef_1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCATCYGGGACC--
GTACATCCGGATTTTT

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCATCYGGGACC
ACATCCTGNT--

PB0128.1_Gcm1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCATCYGGGACC--
TGCGCATAGGGGAGGAG

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCYGGGACC
CCNNACCATCTGGCCTN

MA0522.1_Tcf3/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCATCYGGGACC
NTGCAGCTGTG---

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCATCYGGGACC
-GGTCTGGCAT-

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCATCYGGGACC
-CTTCCNGGAA-

MA0524.1_TFAP2C/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCATCYGGGACC
CATGGCCCCAGGGCA-

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCATCYGGGACC
NTCCCCTCAGGGANT

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCATCYGGGACC
ANCAGCTG-----