Information for motif12


Reverse Opposite:

p-value:1e-18
log p-value:-4.321e+01
Information Content per bp:1.970
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets378.6 +/- 308.8bp
Average Position of motif in Background472.9 +/- 363.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ACACATTTTAAA---
---CCTTTTATAGNC

CHR/Cell-Cycle-Exp/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:ACACATTTTAAA---
-----TTTGAAACCG

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ACACATTTTAAA--
TGTTCCCATTGTGTACT

PH0085.1_Irx4/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACACATTTTAAA--
AATATACATGTAAAACA

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ACACATTTTAAA--
AATATACATGTAAAATT

PB0148.1_Mtf1_2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:ACACATTTTAAA----
--AAATAAGAAAAAAC

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----ACACATTTTAAA
KTTCACACCT------

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ACACATTTTAAA-
NNNNNNCTTTTATAN

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACACATTTTAAA----
NANTATTATAATTNNN

MA0108.2_TBP/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ACACATTTTAAA-
NNNNNNCTTTTATAN