Information for motif19


Reverse Opposite:

p-value:1e-16
log p-value:-3.730e+01
Information Content per bp:1.481
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets349.2 +/- 256.6bp
Average Position of motif in Background607.0 +/- 424.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTACTATGSTGT---
NNNCCATTGTGTNAN

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTACTATGSTGT-------
--AAGACGCTGTAAAGCGA

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTACTATGSTGT-------
--AGGACGCTGTAAAGGGA

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CTACTATGSTGT
CNNNGCTACTGTANNN-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTACTATGSTGT
--GCTGTGGTTT

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTACTATGSTGT----
-NNTCCTGCTGTGNNN

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTACTATGSTGT---
-----ATGGGGTGAT

MA0496.1_MAFK/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CTACTATGSTGT-----
--AAANTGCTGACTNAG

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTACTATGSTGT---
ATTTCCTTTGATCTATA

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTACTATGSTGT-
---CTGTGGTTTN