Information for motif2


Reverse Opposite:

p-value:1e-29
log p-value:-6.850e+01
Information Content per bp:1.761
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets472.1 +/- 347.3bp
Average Position of motif in Background181.1 +/- 77.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTACCKTAGATT
NNACTTACCTN-----

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTACCKTAGATT
NNNGTGACCTTTGNNN

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTACCKTAGATT
NNNNTGACCTTTNNNN

MA0109.1_Hltf/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTACCKTAGATT
-AACCTTATAT-

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTACCKTAGATT
TGACCTTTNCNT

MA0592.1_ESRRA/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTACCKTAGATT
NGTGACCTTGG---

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTACCKTAGATT
NTGACCTTGA---

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTACCKTAGATT
NNNNATGACCTTGANTN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTACCKTAGATT
CTGACCTTTG---

MA0029.1_Mecom/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTACCKTAGATT
TNTTATCTTATCTT