Information for motif20


Reverse Opposite:

p-value:1e-15
log p-value:-3.558e+01
Information Content per bp:1.511
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets689.6 +/- 465.2bp
Average Position of motif in Background333.6 +/- 130.2bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)2.62
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0514.1_Sox3/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCACHTCTGTCC-
---CCTTTGTTTT

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCACHTCTGTCC
---CCTTTGTT-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCACHTCTGTCC
---CCWTTGTY-

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:CCACHTCTGTCC----
------CTGTTCCTGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCACHTCTGTCC
--NCCATTGTTC

MA0515.1_Sox6/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCACHTCTGTCC-
---CCATTGTTTT

MA0103.2_ZEB1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCACHTCTGTCC
CCTCACCTG---

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCACHTCTGTCC---
NNNCCATTGTGTNAN

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCACHTCTGTCC
-RCCATMTGTT-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCACHTCTGTCC-
---CCATTGTTNY