Information for motif21


Reverse Opposite:

p-value:1e-15
log p-value:-3.558e+01
Information Content per bp:1.530
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets541.6 +/- 441.3bp
Average Position of motif in Background685.7 +/- 442.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTCTTGCCGAA
NNACTTGCCTT-

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCTCTTGCCGAA
TGACCTTTGCCCCA-

MA0102.3_CEBPA/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTCTTGCCGAA--
---ATTGCACAATA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTGCCGAA
TGACCTTTGCCCTAN

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTTGCCGAA
TGACCTTTGCCCTA-

MA0466.1_CEBPB/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCTCTTGCCGAA-
--TATTGCACAAT

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CCTCTTGCCGAA----
-CAATTGCAAAAATAT

CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCTCTTGCCGAA-
---GTTGCGCAAT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:CCTCTTGCCGAA
----TTGCCAAG

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CCTCTTGCCGAA
CCCCCTGCTGTG