Information for motif27


Reverse Opposite:

p-value:1e-13
log p-value:-3.166e+01
Information Content per bp:1.969
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets390.9 +/- 268.3bp
Average Position of motif in Background280.9 +/- 144.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TACTAACTAT
---TAAGTAT

PH0106.1_Msx1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TACTAACTAT---
TGCAACTAATTAATTC

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TACTAACTAT
-NCTAATTA-

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TACTAACTAT---
NNNCACTAATTANTNN

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TACTAACTAT-----
GANGTTAACTAGTTTNN

MA0087.1_Sox5/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TACTAACTAT
---NAACAAT

PH0092.1_Lhx2/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TACTAACTAT-----
TAAACTAATTAGTGAAC

PH0135.1_Phox2a/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TACTAACTAT-----
NNACTAATTAATNNNN

PB0172.1_Sox1_2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TACTAACTAT-----
NNNTAACAATTATAN

PH0175.1_Vax2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TACTAACTAT---
GTGCACTAATTAAGAC