Information for motif28


Reverse Opposite:

p-value:1e-13
log p-value:-3.117e+01
Information Content per bp:1.717
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets363.4 +/- 262.5bp
Average Position of motif in Background504.2 +/- 139.7bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAAGTGGACACG
TTAAGTGGA----

MA0130.1_ZNF354C/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAAGTGGACACG
---GTGGAT---

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAAGTGGACACG
AGAGGAAGTG------

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GAAGTGGACACG
ACAGGATGTGGT----

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAAGTGGACACG
NTNNTTAAGTGGNTNAN

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAAGTGGACACG
NTNNTTAAGTGGTTANN

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAAGTGGACACG
ACAGGAAGTG------

MA0475.1_FLI1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAAGTGGACACG
ACAGGAAGTGG-----

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAAGTGGACACG
TTGAGTGSTT---

MA0062.2_GABPA/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAAGTGGACACG
CCGGAAGTGGC----