Information for motif3


Reverse Opposite:

p-value:1e-27
log p-value:-6.420e+01
Information Content per bp:1.530
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets442.5 +/- 306.0bp
Average Position of motif in Background116.2 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0598.1_EHF/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TTCGCCTTCATC
----CCTTCCTG

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTCGCCTTCATC----
GACCACATTCATACAAT

MA0051.1_IRF2/Jaspar

Match Rank:3
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------TTCGCCTTCATC
GTTTTGCTTTCACTTTCC--

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTCGCCTTCATC
AGTTTCAGTTTC---

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TTCGCCTTCATC-
-TGACCTTGACCT

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TTCGCCTTCATC
ACTTTCACTTTC---

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTCGCCTTCATC
----GCTTCC--

MA0505.1_Nr5a2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTCGCCTTCATC--
GCTGACCTTGAACTN

MA0050.2_IRF1/Jaspar

Match Rank:9
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------TTCGCCTTCATC--
TTTTACTTTCACTTTCACTTT

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TTCGCCTTCATC
RSTTTCRSTTTC---