Information for motif30


Reverse Opposite:

p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.713
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets363.3 +/- 351.3bp
Average Position of motif in Background489.1 +/- 184.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACACCAGGAGCG
CACAGCAGGGGG-

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACACCAGGAGCG
CCACACAGCAGGAGA-

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ACACCAGGAGCG
GAGCACAGCAGGACA-

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ACACCAGGAGCG----
ATCCACAGGTGCGAAAA

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACACCAGGAGCG
CCACACAGCAGGAGA-

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ACACCAGGAGCG
--ANCAGGATGT

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ACACCAGGAGCG
NNCACCTGNN---

MA0103.2_ZEB1/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACACCAGGAGCG-
----CAGGTGAGG

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ACACCAGGAGCG
-----CGGAGC-

MA0522.1_Tcf3/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ACACCAGGAGCG
CACAGCTGCAG--