Information for motif41


Reverse Opposite:

p-value:1e-9
log p-value:-2.102e+01
Information Content per bp:1.818
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets495.7 +/- 392.1bp
Average Position of motif in Background365.5 +/- 87.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)4.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATCGAATGGA----
--TGATTGGCTANN

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATCGAATGGA-
-CCGATTGGCT

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ATCGAATGGA---
NANTTTCAAGTGGTTAN

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATCGAATGGA---
AANTTCAAGTGGCTTN

PB0098.1_Zfp410_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ATCGAATGGA---
TATTATGGGATGGATAA

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----ATCGAATGGA---
NNNNGTTGATTGGGTCG

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATCGAATGGA---
AATTTCAAGTGGCTTN

PH0044.1_Homez/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----ATCGAATGGA--
AAAACATCGTTTTTAAG

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ATCGAATGGA---
AAATTCAAGTGGNTTN

MA0161.1_NFIC/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:ATCGAATGGA-
-----TTGGCA