Information for motif42


Reverse Opposite:

p-value:1e-8
log p-value:-2.044e+01
Information Content per bp:1.927
Number of Target Sequences with motif107.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif46.2
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets429.3 +/- 310.4bp
Average Position of motif in Background348.1 +/- 315.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0028.1_ELK1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCGCAAAG
GAGCCGGAAG-

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCGCAAAG
--ACAAAG

PB0075.1_Sp100_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCGCAAAG-
ATTTTACGGAAAAT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCGCAAAG-
ACATCAAAGG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGCAAAG-
-RACAAWGG

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCGCAAAG-
RCCGGAARYN

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCGCAAAG-
-AACAAAGG

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGCAAAG-
ACWTCAAAGG

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGCAAAG-
RCCGGAAGTD

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCGCAAAG---
GCCGCGCAGTGCGT