Information for motif47


Reverse Opposite:

p-value:1e-7
log p-value:-1.742e+01
Information Content per bp:1.955
Number of Target Sequences with motif348.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif209.2
Percentage of Background Sequences with motif1.82%
Average Position of motif in Targets433.1 +/- 347.6bp
Average Position of motif in Background434.9 +/- 354.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATGCTAAG
TTATGCAAAT

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAAG----
TTGTATGCAAATTAGA

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAAG----
TTGTATGCAAATTAGA

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATGCTAAG--
NAGATAAGNN

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAAG-
NBWGATAAGR

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------ATGCTAAG-------
NTNNNNNGTTGCTANGGNNCANA

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATGCTAAG---
NNCGTTGCTATGGNN

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGCTAAG--
CAGATAAGGN

PB0022.1_Gata5_1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAAG-----
TAAACTGATAAGAAGAT

PB0023.1_Gata6_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ATGCTAAG-----
TATAGAGATAAGAATTG