Information for motif50


Reverse Opposite:

p-value:1e-6
log p-value:-1.425e+01
Information Content per bp:1.920
Number of Target Sequences with motif77.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif34.4
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets373.3 +/- 303.6bp
Average Position of motif in Background576.1 +/- 464.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CGCTGTAC-----
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----CGCTGTAC-----
AAGACGCTGTAAAGCGA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCTGTAC
-GCTGTG-

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGCTGTAC
GGTAAGTA-

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCTGTAC
NGCTN---

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCTGTAC----
--CTGTTCCTGG

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCTGTAC
CTTTGT--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGCTGTAC----
AATCGCACTGCATTCCG

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CGCTGTAC
BAACAGCTGT--

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CGCTGTAC
CAGCTGTT-