Information for motif54


Reverse Opposite:

p-value:1e-4
log p-value:-9.342e+00
Information Content per bp:1.960
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets400.5 +/- 223.7bp
Average Position of motif in Background598.1 +/- 378.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAACGTATAT-------
ANNNGGATATATCCNNN

MA0033.1_FOXL1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AAACGTATAT---
-----TATGTNTA

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAACGTATAT---
--AAGGATATNTN

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAACGTATAT
AGAAACGAAAGT

PB0106.1_Arid5a_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AAACGTATAT----
TNNTTTCGTATTNNANN

MA0109.1_Hltf/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAACGTATAT
AACCTTATAT

PB0198.1_Zfp128_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AAACGTATAT-
NNTATANATATACN

PH0082.1_Irx2/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------AAACGTATAT-
ANTNTTACATGTATNTA

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AAACGTATAT
GCACGTACCC

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AAACGTATAT
AACCGANA--