Information for motif55


Reverse Opposite:

p-value:1e-3
log p-value:-9.148e+00
Information Content per bp:1.929
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets373.8 +/- 279.5bp
Average Position of motif in Background372.2 +/- 265.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGTTCGTT---
ACTTTCGTTTCT

MA0131.1_HINFP/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CGTTCGTT-
GCGGACGTTN

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGTTCGTT--
CCTTTGTTTT

PB0027.1_Gmeb1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGTTCGTT-----
NNNTNGTACGTAANNNN

POL007.1_BREd/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGTTCGTT
-GTTTGTT

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGTTCGTT-----
TNNTCCTTTGTTCTNNT

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGTTCGTT
CCTTTGTT

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGTTCGTT
TACGTGCV--

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGTTCGTT-----
NNNTCCTTTGTTCTNNN

PB0094.1_Zfp128_1/Jaspar

Match Rank:10
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CGTTCGTT--
TCTTTGGCGTACCCTAA