Information for motif56


Reverse Opposite:

p-value:1e-3
log p-value:-8.671e+00
Information Content per bp:1.530
Number of Target Sequences with motif436.0
Percentage of Target Sequences with motif3.09%
Number of Background Sequences with motif298.9
Percentage of Background Sequences with motif2.60%
Average Position of motif in Targets430.9 +/- 325.8bp
Average Position of motif in Background484.0 +/- 397.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0122.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CCTCACTT--
-NCCACTTAN

MA0103.2_ZEB1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTCACTT-
CCTCACCTG

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTCACTT---
GTTTCACTTCCG

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCTCACTT-
NNACTTACCTN

MA0063.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCTCACTT--
---CAATTAA

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCTCACTT-----
---CACTTCCTCT

SA0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:-11
Orientation:forward strand
Alignment:-----------CCTCACTT-
CCTTTACCCTTCTTCACCTT

POL002.1_INR/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCTCACTT--
--TCAGTCTT

MA0464.1_Bhlhe40/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCACTT----
-CTCACGTGCAC

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTCACTT---
-GTCACGTGGM