Information for motif6


Reverse Opposite:

p-value:1e-23
log p-value:-5.349e+01
Information Content per bp:1.741
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets372.0 +/- 321.0bp
Average Position of motif in Background393.0 +/- 237.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0017.1_Cux1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ATAATCACGGTT
TAATGATGATCACTA--

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATAATCACGGTT-
NNTAATCCNGNCNN

MA0038.1_Gfi1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATAATCACGGTT
CAAATCACTG--

PH0022.1_Dlx3/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ATAATCACGGTT
TCGCGATAATTACCGAC

PB0045.1_Myb_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATAATCACGGTT-----
NNNNTAACGGTTNNNAN

PB0046.1_Mybl1_1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATAATCACGGTT-----
NNANTAACGGTTNNNAN

PH0072.1_Hoxc8/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----ATAATCACGGTT
TTGGGGTAATTAACGT-

PH0126.1_Obox6/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATAATCACGGTT-
CNATAATCCGNTTNT

PH0052.1_Hoxa5/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----ATAATCACGGTT
NTGAGCTAATTACCNT-

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATAATCACGGTT
AAATAAACA-----