Information for motif9


Reverse Opposite:

p-value:1e-20
log p-value:-4.807e+01
Information Content per bp:1.604
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets455.5 +/- 434.7bp
Average Position of motif in Background747.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CGATAATTCTAA
---TAATT----

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGATAATTCTAA-----
-GCTAATTATAATTATC

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGATAATTCTAA
-AATAATT----

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGATAATTCTAA-----
-TATAATTATAATATTC

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGATAATTCTAA---
CTATAATTGTTAGCG

PB0069.1_Sox21_1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGATAATTCTAA-----
-NNTAATTATAATNANN

PH0022.1_Dlx3/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGATAATTCTAA--
TCGCGATAATTACCGAC

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGATAATTCTAA----
--AAAATTGTTATGAA

PB0174.1_Sox30_2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGATAATTCTAA-----
-TAAGATTATAATACGG

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CGATAATTCTAA-
TNCNNAACAATTTTTNC