| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | E2F(E2F)/Cell-Cycle-Exp/Homer | 1e-3 | -8.173e+00 | 0.0694 | 52.0 | 0.37% | 25.7 | 0.22% | motif file (matrix) | |
| 2 | | NRF1/Promoter/Homer | 1e-2 | -6.473e+00 | 0.1900 | 160.0 | 1.13% | 102.9 | 0.90% | motif file (matrix) | |
| 3 | | p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.019e+00 | 0.1993 | 66.0 | 0.47% | 37.5 | 0.33% | motif file (matrix) | |
| 4 | | GFX(?)/Promoter/Homer | 1e-2 | -4.695e+00 | 0.5621 | 25.0 | 0.18% | 12.1 | 0.11% | motif file (matrix) |