Information for motif11


Reverse Opposite:

p-value:1e-34
log p-value:-8.003e+01
Information Content per bp:1.851
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets371.5 +/- 270.2bp
Average Position of motif in Background994.8 +/- 133.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTATTGTATACC
NNNCCATTGTGTNAN

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTATTGTATACC---
CCATTGTATGCAAAT

MA0084.1_SRY/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTATTGTATACC
--ATTGTTTAN-

MA0077.1_SOX9/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTATTGTATACC
CCATTGTTC---

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTATTGTATACC
TGTTCCCATTGTGTACT

PB0073.1_Sox7_1/Jaspar

Match Rank:6
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------CTATTGTATACC---
TNNANNTCTATTGTTNTNNANN

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTATTGTATACC-
ANNTCTATTGTTCNNNA

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTATTGTATACC--
CNNNTATTGTTCNNNNN

MA0030.1_FOXF2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTATTGTATACC----
--NTTGTTTACGTTNN

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTATTGTATACC----
NNNTTTGTTTACNTTNN