Information for motif12


Reverse Opposite:

p-value:1e-34
log p-value:-7.896e+01
Information Content per bp:1.708
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets414.1 +/- 337.5bp
Average Position of motif in Background374.4 +/- 281.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0162.1_Six2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTACCCCAC-
ANANGTGATACCCCATT

PH0165.1_Six6_1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTACCCCAC-
ANANNTGATACCCTATN

PH0163.1_Six3/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTACCCCAC-
ANANGTGATACCCTATN

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTACCCCAC-
ANANNTGATACCCNATN

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTACCCCAC-
ANNNATGATACCCCATC

PB0156.1_Plagl1_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GTGCTACCCCAC---
NNNNGGTACCCCCCANN

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTGCTACCCCAC-
ACTATGCCAACCTACC

PH0166.1_Six6_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTGCTACCCCAC-
AATNTTGATACCCTATN

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTGCTACCCCAC
CNGTCCTCCC----

MA0111.1_Spz1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTGCTACCCCAC
GCTGTTACCCT--