Information for motif15


Reverse Opposite:

p-value:1e-32
log p-value:-7.454e+01
Information Content per bp:1.702
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets394.6 +/- 324.5bp
Average Position of motif in Background691.7 +/- 287.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGGGGAACTCAC
GGGGGAATCCCC

PB0204.1_Zfp740_2/Jaspar

Match Rank:2
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------GGGGGAACTCAC
ANTNCCGGGGGGAANTT--

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGGGGAACTCAC
-GGGAAATTCCC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGGGAACTCAC
TGGGGA------

PB0058.1_Sfpi1_1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGGGGAACTCAC
TTAAGAGGAAGTTA-

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGGGGAACTCAC----
AAGGCGAAATCATCGCA

MA0107.1_RELA/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGGGGAACTCAC
--GGAAATTCCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGGGGAACTCAC--
--GGGAAATCCCCN

MA0057.1_MZF1_5-13/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGGGGAACTCAC
GGAGGGGGAA-----

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGGGGAACTCAC
--GGAAATCCCC