Information for motif2


Reverse Opposite:

p-value:1e-48
log p-value:-1.126e+02
Information Content per bp:1.871
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets362.0 +/- 249.9bp
Average Position of motif in Background772.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0116.1_Zfp423/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCTMTGGGTGCC
GGCACCCAGGGGTGC-

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTMTGGGTGCC-----
-NNNGGGGCGCCCCCNN

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCTMTGGGTGCC
TCCCCTGGGGAC-

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCTMTGGGTGCC-------
---GGGTGTGCCCAAAAGG

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CCTMTGGGTGCC
WTGSCCTSAGGS----

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCTMTGGGTGCC-
---TTGCGTGCVA

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCTMTGGGTGCC
ATGCCCTGAGGC----

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCTMTGGGTGCC
GTCTGTGGTTT--

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCTMTGGGTGCC-----
NNNNTTGGCGCCGANNN

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CCTMTGGGTGCC
TCACCTCTGGGCAG-