Information for motif23


Reverse Opposite:

p-value:1e-24
log p-value:-5.632e+01
Information Content per bp:1.530
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets418.7 +/- 457.7bp
Average Position of motif in Background298.1 +/- 271.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TGGTAATGAT
-GKTAATGR-

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGGTAATGAT-----
NNNGGTAATTATNGNGN

PH0023.1_Dlx4/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGTAATGAT-----
GTCGGTAATTATNGNGN

PH0072.1_Hoxc8/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGTAATGAT---
TTGGGGTAATTAACGT

PH0053.1_Hoxa6/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGTAATGAT---
NTNAGGTAATTACCTT

PH0017.1_Cux1_2/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGTAATGAT-----
TAATGATGATCACTA

PH0151.1_Pou6f1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGTAATGAT-----
GACGATAATGAGCTTGC

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGTAATGAT-
TGGAGGTAATTAAC

PH0061.1_Hoxb6/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGTAATGAT---
TATTGGTAATTACCTT

MF0010.1_Homeobox_class/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TGGTAATGAT-
----AATAATT