Information for motif29


Reverse Opposite:

p-value:1e-19
log p-value:-4.597e+01
Information Content per bp:1.735
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets334.4 +/- 226.2bp
Average Position of motif in Background667.6 +/- 558.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.70
Offset:5
Orientation:forward strand
Alignment:ATACGAATTATG
-----AATTA--

MA0125.1_Nobox/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATACGAATTATG
--ACCAATTA--

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATACGAATTATG-
NNNTAACAATTATAN

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:ATACGAATTATG
-----AATTATT

PB0176.1_Sox5_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATACGAATTATG---
NNCTNAATTATGANN

PH0106.1_Msx1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATACGAATTATG--
TGCAACTAATTAATTC

PH0143.1_Pou2f1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATACGAATTATG--
ATATATTAATTAAGTA

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATACGAATTATG
--NCTAATTA--

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATACGAATTATG---
GAAGACCAATTAGCGCT

PH0022.1_Dlx3/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATACGAATTATG----
NNNGGTAATTATNGNGN