Information for motif38


Reverse Opposite:

p-value:1e-15
log p-value:-3.551e+01
Information Content per bp:1.530
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets541.2 +/- 443.2bp
Average Position of motif in Background731.0 +/- 430.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTTCATGAGA--
ACATTCATGACACG

MA0520.1_Stat6/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GTTCATGAGA---
CATTTCCTGAGAAAT

STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTCATGAGA-
-TTCCKNAGAA

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTTCATGAGA-
ANTTCTNNAGAA

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTTCATGAGA----
GACGATAATGAGCTTGC

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTTCATGAGA---
NAATTTTACGAGNTNN

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GTTCATGAGA---
ANATTTTACGAGNNNN

MA0526.1_USF2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTTCATGAGA--
-GTCATGTGACC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTTCATGAGA----
AAACATAATGAGGTTGC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTTCATGAGA
TTTTATTRGN