Information for motif41


Reverse Opposite:

p-value:1e-13
log p-value:-3.141e+01
Information Content per bp:1.921
Number of Target Sequences with motif184.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif41.1
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets404.8 +/- 382.6bp
Average Position of motif in Background455.9 +/- 379.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0106.1_Arid5a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------CGCATTTA---
TNNTTTCGTATTNNANN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCATTTA-
-BCMATTAG

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGCATTTA---
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGCATTTA---
NNNNNNCTTTTATAN

PB0171.1_Sox18_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGCATTTA----
NNNNTGAATTCANNNC

PB0024.1_Gcm1_1/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CGCATTTA-
TCGTACCCGCATCATT

MA0485.1_Hoxc9/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGCATTTA-----
NTGATTTATGGCC

PB0184.1_Tbp_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCATTTA-------
CCGATTTAAGCGACC

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGCATTTA------
ACAAGCAATTAATGAAT

PB0163.1_Six6_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGCATTTA------
ANNNGGATATATCCNNN