Information for motif49


Reverse Opposite:

p-value:1e-7
log p-value:-1.792e+01
Information Content per bp:1.918
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets449.3 +/- 363.1bp
Average Position of motif in Background687.8 +/- 268.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)2.85
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0098.1_Zfp410_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCCATTCGAT----
NNNTCCATCCCATAANN

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCCATTCGAT----
AATCAATTCAATAATT

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCCATTCGAT--
NNCATTCATTCATNNN

PB0040.1_Lef1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCCATTCGAT-----
AATCCCTTTGATCTATC

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TCCATTCGAT-----
ATTTCCTTTGATCTATA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCCATTCGAT
ATTTTCCATT----

PB0105.1_Arid3a_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCCATTCGAT------
-NNATNTGATANNNNN

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCCATTCGAT--
TNCCTTTGATGT

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCCATTCGAT-----
NNTTCCTTTGATCTANA

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCCATTCGAT-----
NNTTCCTTTGATCTNNA