Information for motif5


Reverse Opposite:

p-value:1e-39
log p-value:-9.170e+01
Information Content per bp:1.841
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets449.3 +/- 365.8bp
Average Position of motif in Background461.2 +/- 335.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGCGTTAAA------
TGATTGTTAACAGTTGG

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGCGTTAAA
CAGCC-----

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGTTAAA
CGGAGC------

MA0465.1_CDX2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGCGTTAAA-
AAGCCATAAAA

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGCGTTAAA-----
AGAGCCATAAAATTCG

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGCGTTAAA-
-GGCGGGAAAH

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCGTTAAA--
NNNTNGGGCGTATNNTN

MA0024.2_E2F1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGCGTTAAA
CGGGCGGGAGG

MA0069.1_Pax6/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCGTTAAA
AANTCATGCGTGAA-

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGCGTTAAA-
-NGCAATTAAA