Information for motif50


Reverse Opposite:

p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.963
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif14.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets468.6 +/- 362.8bp
Average Position of motif in Background437.5 +/- 483.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ACCGACAG--
NNNTGAGTGACAGCT

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ACCGACAG----
NNNACCGAGAGTNNN

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:ACCGACAG-
---CACAGN

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACCGACAG
AACCGANA-

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACCGACAG----
TTGACCGAGAATTCC

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACCGACAG----
GNNACCGAGAATNNN

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACCGACAG--
TGAGTGACAGSC

PB0179.1_Sp100_2/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------ACCGACAG-
NNTTTANNCGACGNA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACCGACAG
CCAGACAG

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ACCGACAG-
NTGATTGACAGN