Information for motif54


Reverse Opposite:

p-value:1e-3
log p-value:-7.116e+00
Information Content per bp:1.530
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets419.4 +/- 424.9bp
Average Position of motif in Background546.5 +/- 242.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------TACGATCC--
GNNNTTTTACGACCTNA

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TACGATCC--
NNNATTTTACGACNNTN

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TACGATCC
TACTNNNN

PH0076.1_Hoxd11/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------TACGATCC--
ANNATTTTACGACNTNA

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TACGATCC-
---GCTCCG

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------TACGATCC--
CATACAATACGAAATAA

PB0125.1_Gata3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------TACGATCC------
NNNNNCGATANNATCTNNNNAN

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TACGATCC--
ANNTTTTACGACNTNN

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TACGATCC--
ANATTTTACGAGNNNN

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------TACGATCC--
NNNTTTTACGACNTTN