Information for motif6


Reverse Opposite:

p-value:1e-38
log p-value:-8.978e+01
Information Content per bp:1.948
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets423.6 +/- 302.7bp
Average Position of motif in Background427.6 +/- 294.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0063.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTATAAGTGARG
--TTAATTG---

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTATAAGTGARG
--TTAAGTGGA-

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTATAAGTGARG---
NTNNTTAAGTGGTTANN

MA0109.1_Hltf/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTATAAGTGARG
NNATAAGGNN--

MA0108.2_TBP/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTATAAGTGARG---
GTATAAAAGGCGGGG

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTATAAGTGARG
--CTAATKGV--

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTATAAGTGARG---
GTATAAAAGGCGGGG

PB0128.1_Gcm1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTATAAGTGARG--
TGCGCATAGGGGAGGAG

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTATAAGTGARG---
NTNNTTAAGTGGNTNAN

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTATAAGTGARG
GGCCATAAATCA--