Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 23158)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 9652)	% of Background Sequences with Motif
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-5	-1.160e+01	0.0022	88.0	0.38%	22.2	0.23%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-4	-1.094e+01	0.0022	96.0	0.41%	25.7	0.27%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.582e+00	0.0154	1198.0	5.17%	445.6	4.67%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-3	-7.629e+00	0.0299	106.0	0.46%	31.8	0.33%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.855e+00	0.0519	943.0	4.07%	351.8	3.69%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.002e+00	0.1014	1191.0	5.14%	452.6	4.75%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-5.677e+00	0.1203	36.0	0.16%	9.3	0.10%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.814e+00	0.6781	283.0	1.22%	103.0	1.08%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.768e+00	0.6781	293.0	1.27%	107.3	1.13%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.596e+00	0.6781	384.0	1.66%	143.5	1.51%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-3.521e+00	0.6781	878.0	3.79%	339.6	3.56%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.464e+00	0.6781	216.0	0.93%	78.3	0.82%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.437e+00	0.6781	1897.0	8.19%	749.3	7.86%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.399e+00	0.6781	532.0	2.30%	202.2	2.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.366e+00	0.6781	4962.0	21.42%	1995.2	20.93%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-1	-3.273e+00	0.6781	70.0	0.30%	23.9	0.25%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.226e+00	0.6781	391.0	1.69%	147.3	1.55%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.771e+00	0.8553	60.0	0.26%	20.9	0.22%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.758e+00	0.8553	4187.0	18.08%	1686.6	17.70%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.722e+00	0.8553	175.0	0.76%	64.9	0.68%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.572e+00	0.8945	1887.0	8.15%	752.9	7.90%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.377e+00	1.0000	1821.0	7.86%	727.5	7.63%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.114e+00	1.0000	6094.0	26.31%	2475.5	25.97%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.093e+00	1.0000	477.0	2.06%	186.3	1.95%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.093e+00	1.0000	477.0	2.06%	186.3	1.95%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.057e+00	1.0000	5181.0	22.37%	2102.3	22.06%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.904e+00	1.0000	8391.0	36.23%	3421.6	35.90%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.806e+00	1.0000	211.0	0.91%	81.4	0.85%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-1.746e+00	1.0000	233.0	1.01%	90.2	0.95%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.609e+00	1.0000	4191.0	18.09%	1704.1	17.88%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.578e+00	1.0000	4197.0	18.12%	1707.9	17.92%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.506e+00	1.0000	1715.0	7.40%	693.4	7.27%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.456e+00	1.0000	4565.0	19.71%	1860.6	19.52%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.368e+00	1.0000	4595.0	19.84%	1874.7	19.67%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.366e+00	1.0000	2530.0	10.92%	1028.3	10.79%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.358e+00	1.0000	9219.0	39.80%	3773.7	39.59%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.330e+00	1.0000	928.0	4.01%	375.0	3.93%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.172e+00	1.0000	18958.0	81.85%	7788.1	81.71%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.161e+00	1.0000	3929.0	16.96%	1606.0	16.85%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.117e+00	1.0000	3432.0	14.82%	1402.1	14.71%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.082e+00	1.0000	1684.0	7.27%	686.2	7.20%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.026e+00	1.0000	44.0	0.19%	17.3	0.18%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.025e+00	1.0000	3230.0	13.95%	1321.2	13.86%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.013e+00	1.0000	239.0	1.03%	96.8	1.02%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.003e+00	1.0000	1942.0	8.38%	793.9	8.33%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.882e-01	1.0000	273.0	1.18%	110.8	1.16%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.588e-01	1.0000	466.0	2.01%	189.4	1.99%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-9.398e-01	1.0000	1876.0	8.10%	767.2	8.05%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.367e-01	1.0000	26.0	0.11%	10.7	0.11%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.288e-01	1.0000	1249.0	5.39%	510.1	5.35%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-8.750e-01	1.0000	364.0	1.57%	148.8	1.56%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.708e-01	1.0000	1627.0	7.02%	666.6	6.99%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.646e-01	1.0000	1617.0	6.98%	662.8	6.95%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.416e-01	1.0000	1767.0	7.63%	724.6	7.60%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.232e-01	1.0000	1099.0	4.74%	450.1	4.72%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-7.921e-01	1.0000	294.0	1.27%	120.0	1.26%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.370e-01	1.0000	5397.0	23.30%	2219.2	23.28%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-7.236e-01	1.0000	801.0	3.46%	329.6	3.46%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.071e-01	1.0000	1063.0	4.59%	437.2	4.59%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.756e-01	1.0000	656.0	2.83%	270.2	2.84%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.382e-01	1.0000	1371.0	5.92%	565.1	5.93%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.376e-01	1.0000	2221.0	9.59%	915.5	9.61%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.294e-01	1.0000	720.0	3.11%	297.3	3.12%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.964e-01	1.0000	520.0	2.25%	215.9	2.27%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.865e-01	1.0000	447.0	1.93%	185.7	1.95%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-5.539e-01	1.0000	928.0	4.01%	384.2	4.03%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.526e-01	1.0000	1277.0	5.51%	528.9	5.55%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.461e-01	1.0000	5031.0	21.72%	2075.4	21.78%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-5.449e-01	1.0000	453.0	1.96%	188.4	1.98%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-5.290e-01	1.0000	293.0	1.27%	122.9	1.29%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.183e-01	1.0000	2080.0	8.98%	860.4	9.03%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.619e-01	1.0000	1335.0	5.76%	554.8	5.82%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.109e-01	1.0000	7245.0	31.28%	2994.0	31.41%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.108e-01	1.0000	1298.0	5.60%	540.2	5.67%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.086e-01	1.0000	5029.0	21.71%	2080.9	21.83%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.040e-01	1.0000	1849.0	7.98%	768.7	8.06%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.966e-01	1.0000	1041.0	4.49%	434.2	4.56%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.928e-01	1.0000	222.0	0.96%	94.0	0.99%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.873e-01	1.0000	7793.0	33.65%	3220.1	33.79%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-3.719e-01	1.0000	62.0	0.27%	27.8	0.29%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-3.585e-01	1.0000	2910.0	12.56%	1208.6	12.68%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.459e-01	1.0000	7741.0	33.42%	3201.6	33.59%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.394e-01	1.0000	9600.0	41.45%	3967.1	41.62%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.331e-01	1.0000	534.0	2.31%	226.0	2.37%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.224e-01	1.0000	2732.0	11.80%	1136.8	11.93%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.800e-01	1.0000	5286.0	22.82%	2193.3	23.01%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.767e-01	1.0000	2913.0	12.58%	1213.0	12.73%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.613e-01	1.0000	3639.0	15.71%	1514.4	15.89%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.499e-01	1.0000	3589.0	15.50%	1494.6	15.68%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.479e-01	1.0000	5104.0	22.04%	2120.4	22.25%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.425e-01	1.0000	1750.0	7.56%	733.8	7.70%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.303e-01	1.0000	471.0	2.03%	201.6	2.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.205e-01	1.0000	254.0	1.10%	110.7	1.16%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.008e-01	1.0000	20002.0	86.36%	8249.0	86.55%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.992e-01	1.0000	500.0	2.16%	214.2	2.25%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.954e-01	1.0000	12824.0	55.37%	5305.8	55.67%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.930e-01	1.0000	1944.0	8.39%	816.2	8.56%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.887e-01	1.0000	4464.0	19.27%	1860.3	19.52%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.672e-01	1.0000	4878.0	21.06%	2033.4	21.33%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.619e-01	1.0000	2303.0	9.94%	967.5	10.15%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.530e-01	1.0000	885.0	3.82%	377.9	3.96%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.527e-01	1.0000	1141.0	4.93%	484.3	5.08%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.502e-01	1.0000	1088.0	4.70%	462.2	4.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.433e-01	1.0000	3942.0	17.02%	1649.0	17.30%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.431e-01	1.0000	479.0	2.07%	207.2	2.17%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.423e-01	1.0000	5397.0	23.30%	2250.8	23.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.095e-01	1.0000	7903.0	34.12%	3289.7	34.52%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.020e-01	1.0000	8242.0	35.58%	3430.0	35.99%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.009e-01	1.0000	1119.0	4.83%	478.9	5.03%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.003e-01	1.0000	2483.0	10.72%	1047.4	10.99%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.428e-02	1.0000	3813.0	16.46%	1600.8	16.80%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.912e-02	1.0000	4919.0	21.24%	2059.4	21.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.651e-02	1.0000	4976.0	21.48%	2083.1	21.86%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.538e-02	1.0000	487.0	2.10%	213.5	2.24%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.899e-02	1.0000	2578.0	11.13%	1089.8	11.43%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.543e-02	1.0000	4188.0	18.08%	1760.6	18.47%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.385e-02	1.0000	1770.0	7.64%	754.7	7.92%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.099e-02	1.0000	3644.0	15.73%	1535.3	16.11%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.731e-02	1.0000	11543.0	49.84%	4799.8	50.36%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.719e-02	1.0000	1634.0	7.05%	698.7	7.33%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-5.591e-02	1.0000	2541.0	10.97%	1077.4	11.30%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.799e-02	1.0000	6605.0	28.52%	2765.3	29.01%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.732e-02	1.0000	2130.0	9.20%	907.8	9.53%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.637e-02	1.0000	579.0	2.50%	255.9	2.68%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-4.496e-02	1.0000	13371.0	57.73%	5554.0	58.27%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.022e-02	1.0000	561.0	2.42%	248.7	2.61%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.326e-02	1.0000	787.0	3.40%	345.6	3.63%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-3.276e-02	1.0000	498.0	2.15%	222.9	2.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.247e-02	1.0000	10498.0	45.32%	4377.7	45.93%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.778e-02	1.0000	839.0	3.62%	368.4	3.86%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.711e-02	1.0000	2014.0	8.70%	863.3	9.06%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.651e-02	1.0000	5257.0	22.70%	2214.2	23.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.340e-02	1.0000	7930.0	34.24%	3322.5	34.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.275e-02	1.0000	1694.0	7.31%	730.6	7.67%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.207e-02	1.0000	4431.0	19.13%	1873.3	19.66%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.125e-02	1.0000	13025.0	56.23%	5423.0	56.90%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.015e-02	1.0000	1692.0	7.31%	730.3	7.66%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.702e-02	1.0000	599.0	2.59%	268.6	2.82%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.697e-02	1.0000	330.0	1.42%	152.3	1.60%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.673e-02	1.0000	323.0	1.39%	149.1	1.56%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.634e-02	1.0000	1817.0	7.84%	784.7	8.23%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.545e-02	1.0000	2794.0	12.06%	1194.1	12.53%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.433e-02	1.0000	7258.0	31.34%	3050.8	32.01%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.359e-02	1.0000	1560.0	6.74%	678.0	7.11%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.321e-02	1.0000	3768.0	16.27%	1602.3	16.81%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.293e-02	1.0000	2824.0	12.19%	1208.6	12.68%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.260e-02	1.0000	5168.0	22.31%	2185.1	22.93%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.239e-02	1.0000	1355.0	5.85%	591.5	6.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.194e-02	1.0000	2450.0	10.58%	1052.7	11.05%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.116e-02	1.0000	442.0	1.91%	202.5	2.12%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.052e-02	1.0000	634.0	2.74%	285.2	2.99%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.046e-02	1.0000	1523.0	6.58%	663.8	6.96%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.610e-03	1.0000	984.0	4.25%	435.5	4.57%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.904e-03	1.0000	3453.0	14.91%	1474.2	15.47%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.863e-03	1.0000	145.0	0.63%	72.5	0.76%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.812e-03	1.0000	3932.0	16.98%	1674.6	17.57%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-8.394e-03	1.0000	5977.0	25.81%	2525.7	26.50%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.092e-03	1.0000	7238.0	31.25%	3051.6	32.02%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.989e-03	1.0000	3584.0	15.47%	1532.8	16.08%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.835e-03	1.0000	1371.0	5.92%	602.1	6.32%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.684e-03	1.0000	1025.0	4.43%	455.5	4.78%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.394e-03	1.0000	1883.0	8.13%	819.1	8.59%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.228e-03	1.0000	1802.0	7.78%	785.4	8.24%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.213e-03	1.0000	12968.0	55.99%	5415.4	56.82%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.816e-03	1.0000	6588.0	28.44%	2784.4	29.21%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.729e-03	1.0000	15751.0	68.00%	6556.8	68.80%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.705e-03	1.0000	1166.0	5.03%	517.0	5.42%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.461e-03	1.0000	346.0	1.49%	163.5	1.72%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-4.425e-03	1.0000	11601.0	50.09%	4855.1	50.94%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-4.341e-03	1.0000	3944.0	17.03%	1685.1	17.68%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.275e-03	1.0000	6496.0	28.05%	2747.5	28.83%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.162e-03	1.0000	14936.0	64.48%	6224.8	65.31%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.610e-03	1.0000	12659.0	54.65%	5292.7	55.53%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.071e-03	1.0000	16689.0	72.05%	6943.5	72.85%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.066e-03	1.0000	1719.0	7.42%	753.1	7.90%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.958e-03	1.0000	8066.0	34.82%	3401.7	35.69%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.957e-03	1.0000	2396.0	10.34%	1039.6	10.91%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.927e-03	1.0000	2498.0	10.78%	1082.8	11.36%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.636e-03	1.0000	3638.0	15.71%	1561.8	16.39%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.398e-03	1.0000	2904.0	12.54%	1254.3	13.16%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.338e-03	1.0000	2737.0	11.82%	1184.4	12.43%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.169e-03	1.0000	6134.0	26.48%	2603.1	27.31%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.079e-03	1.0000	6097.0	26.32%	2588.6	27.16%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.062e-03	1.0000	2716.0	11.73%	1176.7	12.35%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.965e-03	1.0000	6963.0	30.06%	2948.6	30.94%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.228e-03	1.0000	440.0	1.90%	208.1	2.18%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.168e-03	1.0000	1130.0	4.88%	507.0	5.32%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.051e-03	1.0000	5115.0	22.08%	2185.9	22.94%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.720e-04	1.0000	6565.0	28.34%	2789.7	29.27%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.630e-04	1.0000	5051.0	21.81%	2159.8	22.66%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-8.580e-04	1.0000	6394.0	27.61%	2719.8	28.54%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.920e-04	1.0000	10984.0	47.42%	4618.4	48.46%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.720e-04	1.0000	543.0	2.34%	255.4	2.68%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.940e-04	1.0000	940.0	4.06%	428.6	4.50%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.380e-04	1.0000	6279.0	27.11%	2675.2	28.07%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.090e-04	1.0000	637.0	2.75%	297.6	3.12%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.770e-04	1.0000	4964.0	21.43%	2128.6	22.33%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.670e-04	1.0000	13697.0	59.14%	5737.7	60.20%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.490e-04	1.0000	9553.0	41.24%	4033.7	42.32%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.430e-04	1.0000	15263.0	65.90%	6380.5	66.95%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.110e-04	1.0000	1509.0	6.51%	675.0	7.08%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.060e-04	1.0000	1057.0	4.56%	481.4	5.05%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.910e-04	1.0000	3871.0	16.71%	1674.5	17.57%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.330e-04	1.0000	2281.0	9.85%	1005.5	10.55%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.130e-04	1.0000	2320.0	10.02%	1022.4	10.73%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.590e-04	1.0000	6211.0	26.82%	2656.8	27.88%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-1.560e-04	1.0000	11244.0	48.55%	4739.7	49.73%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.420e-04	1.0000	2492.0	10.76%	1097.9	11.52%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.340e-04	1.0000	3524.0	15.21%	1533.8	16.09%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.320e-04	1.0000	3144.0	13.57%	1373.3	14.41%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.300e-04	1.0000	1428.0	6.17%	644.9	6.77%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.190e-04	1.0000	1747.0	7.54%	781.9	8.20%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.180e-04	1.0000	4241.0	18.31%	1835.3	19.26%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.090e-04	1.0000	15803.0	68.23%	6609.7	69.35%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.500e-05	1.0000	4202.0	18.14%	1820.0	19.10%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.400e-05	1.0000	1383.0	5.97%	626.9	6.58%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.100e-05	1.0000	6636.0	28.65%	2837.1	29.77%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.700e-05	1.0000	2347.0	10.13%	1038.7	10.90%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.400e-05	1.0000	8291.0	35.80%	3529.0	37.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.500e-05	1.0000	10390.0	44.86%	4397.2	46.14%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.300e-05	1.0000	5018.0	21.66%	2167.9	22.75%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.100e-05	1.0000	5281.0	22.80%	2279.1	23.91%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.000e-05	1.0000	4138.0	17.87%	1800.3	18.89%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.000e-05	1.0000	5020.0	21.67%	2170.4	22.77%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-2.600e-05	1.0000	7912.0	34.16%	3376.4	35.43%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.800e-05	1.0000	5971.0	25.78%	2571.1	26.98%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.700e-05	1.0000	8401.0	36.27%	3582.3	37.59%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.600e-05	1.0000	9488.0	40.96%	4032.7	42.31%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.400e-05	1.0000	5470.0	23.62%	2363.4	24.80%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.000e-05	1.0000	11079.0	47.83%	4692.8	49.24%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.000e-06	1.0000	1145.0	4.94%	532.8	5.59%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.000e-06	1.0000	11299.0	48.78%	4797.4	50.34%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.000e-06	1.0000	5119.0	22.10%	2231.8	23.42%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.000e-06	1.0000	1242.0	5.36%	582.8	6.11%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.000e-06	1.0000	14907.0	64.36%	6278.5	65.87%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.000e-06	1.0000	4948.0	21.36%	2163.3	22.70%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	10662.0	46.03%	4542.5	47.66%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	7060.0	30.48%	3051.3	32.01%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	7825.0	33.78%	3376.9	35.43%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	8896.0	38.41%	3828.1	40.16%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-0.000e+00	1.0000	6899.0	29.79%	3000.9	31.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	2181.0	9.42%	1007.0	10.57%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-0.000e+00	1.0000	7938.0	34.27%	3444.1	36.14%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	10697.0	46.18%	4592.3	48.18%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	6163.0	26.61%	2708.1	28.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-0.000e+00	1.0000	6578.0	28.40%	2898.7	30.41%