Information for motif31


Reverse Opposite:

p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.912
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif18.57%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif5.73%
Average Position of motif in Targets485.5 +/- 520.9bp
Average Position of motif in Background634.6 +/- 618.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATG-----
NGANTTTTATGGCTCN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTTTTATG--
NTTTTATGAC

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TTTTTATG---
-TTTTATTRGN

MA0465.1_CDX2/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TTTTTATG----
-TTTTATGGCTN

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTTTTATG-----
ANTAATTTTATGGCCGN

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATG-----
NNANTTTTATTGGNNN

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTTTATG---
-TTTAATTGCN

MA0151.1_ARID3A/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTTTTATG
-TTTAAT-

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATG-----
NNAATTTTATTGGNTN

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------TTTTTATG-
NNNNNNCTTTTATAN