Information for motif17


Reverse Opposite:

p-value:1e-16
log p-value:-3.813e+01
Information Content per bp:1.745
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif8.54%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets292.4 +/- 252.0bp
Average Position of motif in Background460.4 +/- 318.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0524.1_TFAP2C/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGAGCTTCAGG---
CATGGCCCCAGGGCA

MA0483.1_Gfi1b/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGAGCTTCAGG
TGCTGTGATTT---

MA0003.2_TFAP2A/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGAGCTTCAGG---
CATTGCCTCAGGGCA

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTGAGCTTCAGG
----GCTTCC--

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGAGCTTCAGG-
-TGACCTTGANNN

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTGAGCTTCAGG----
----GCCTCAGGGCAT

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTGAGCTTCAGG--
----ACTTCCGGNT

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGAGCTTCAGG
NTGACCTTGA--

MA0028.1_ELK1/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CTGAGCTTCAGG---
-----CTTCCGGNNN

MA0076.2_ELK4/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTGAGCTTCAGG-
--CCACTTCCGGC