Information for motif21


Reverse Opposite:

p-value:1e-13
log p-value:-3.173e+01
Information Content per bp:1.897
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif21.34%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif8.14%
Average Position of motif in Targets364.5 +/- 331.1bp
Average Position of motif in Background428.6 +/- 345.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--GTGACAGA--
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GTGACAGA---
AGGTGNCAGACAG

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------GTGACAGA-
NNNTGAGTGACAGCT

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTGACAGA-----
NNATTGACAGGTGCTT

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTGACAGA-----
GATATTGACAGCTGCGT

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGACAGA
NCGTGACN--

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTGACAGA-
TGAGTGACAGSC

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTGACAGA-----
GTATTGACAGGTNNTT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTGACAGA
AGGTGTCA--

MA0100.2_Myb/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GTGACAGA---
-TGGCAGTTGN