Information for motif32


Reverse Opposite:

p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.530
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif6.71%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets405.4 +/- 411.2bp
Average Position of motif in Background425.7 +/- 269.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGCCACTCTTG
-AGCCACTCAAG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGCCACTCTTG
-AASCACTCAA-

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGCCACTCTTG
--RSCACTYRAG

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAGCCACTCTTG---
TAAGCCACTTAACATT

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AAGCCACTCTTG
ACTAGCCAATCA--

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AAGCCACTCTTG
SSAATCCACANN--

MA0479.1_FOXH1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AAGCCACTCTTG
TCCAATCCACA----

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AAGCCACTCTTG
-ATCCAC-----

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAGCCACTCTTG---
TAAGCCACTTGAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAGCCACTCTTG
--NCCACTTAN-