Information for motif36


Reverse Opposite:

p-value:1e-8
log p-value:-2.015e+01
Information Content per bp:1.956
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif4.88%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets298.8 +/- 228.1bp
Average Position of motif in Background103.7 +/- 68.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGCCAATA--
AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATA-
ACTAGCCAATCA

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGCCAATA
TGCCAA--

MA0502.1_NFYB/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATA--
AAATGGACCAATCAG

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATA-------
AACCCAATAAAATTCG

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGCCAATA--
-GACAATGNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATA
BCAGACWA--

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCCAATA--
GGCCATTAAC

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCCAATA--------
--CTAATATTGCTAAA

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATA-------
CTACCAATAAAATTCT