Information for motif26


Reverse Opposite:

p-value:1e-17
log p-value:-4.090e+01
Information Content per bp:1.843
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif12.79%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif2.62%
Average Position of motif in Targets358.4 +/- 337.4bp
Average Position of motif in Background370.8 +/- 178.2bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTGGA
TGACCTTGAN

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCCTTGGA---
----TGGAAAA

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCCTTGGA-
---GTGGAT

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCCTTGGA-
---TTGGCA

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCTTGGA--
NGTTGCCATGGCAA

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCTTGGA---
-CCTTTGAWGT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCCTTGGA---
-CCTTTGATGT

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCCTTGGA
TGACCTTGAV

MA0600.1_RFX2/Jaspar

Match Rank:9
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------GCCTTGGA---
NNNCNGTTGCCATGGNAAC

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTGGA---
GCTGACCTTGAACTN