Information for motif38


Reverse Opposite:

p-value:1e-8
log p-value:-1.850e+01
Information Content per bp:1.530
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif9.51%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif2.97%
Average Position of motif in Targets399.6 +/- 398.9bp
Average Position of motif in Background634.2 +/- 408.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCTCATCCCTAA
GAGCCCTTGTCCCTAA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTCATCCCTAA
GCTAATCC----

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTCATCCCTAA--
AGGCTAATCCCCAANG

PH0035.1_Gsc/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCTCATCCCTAA-
AATCGTTAATCCCTTTA

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCTCATCCCTAA-
GANNATTAATCCCTNNN

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCTCATCCCTAA
ACCACATCCTGT-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTCATCCCTAA
--TAATCCCN--

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTCATCCCTAA
CNGTCCTCCC---

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CCTCATCCCTAA-
GNNNATTAATCCCTNCN

PH0129.1_Otx1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CCTCATCCCTAA-
NNNAATTAATCCCCNCN