Information for motif6


Reverse Opposite:

p-value:1e-36
log p-value:-8.414e+01
Information Content per bp:1.646
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif12.13%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets333.7 +/- 297.7bp
Average Position of motif in Background727.5 +/- 533.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGGGCTCAAGCG-
NTNNNGGGGTCANGNNN

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGGGCTCAAGCG-
CTCCAGGGGTCAATTGA

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TGGGCTCAAGCG-
GGCGAGGGGTCAAGGGC

PB0157.1_Rara_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGGGCTCAAGCG
AGAGCGGGGTCAAGTA

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGGGCTCAAGCG
--NGCTN-----

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTCAAGCG
ATGCCCTGAGGC-

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGGCTCAAGCG
WTGSCCTSAGGS-

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGGCTCAAGCG
AGCCACTCAAG--

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGGGCTCAAGCG--
NTNGCCTCAGGCNNN

MA0003.2_TFAP2A/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGGCTCAAGCG---
TGCCCTGAGGCANTN