Information for motif13


Reverse Opposite:

p-value:1e-39
log p-value:-9.081e+01
Information Content per bp:1.775
Number of Target Sequences with motif152.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets510.2 +/- 453.5bp
Average Position of motif in Background736.0 +/- 452.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---ACKTTACAAC----
NNNATTTTACGACNNTN

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ACKTTACAAC----
ANNATTTTACGACNTNA

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ACKTTACAAC----
ANNTTTTACGACNTNN

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ACKTTACAAC----
NNNTTTTACGACNTTN

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACKTTACAAC---
TACCATAGCAACGGT

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACKTTACAAC---
CCGCATAGCAACGGA

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACKTTACAAC----
GNNNTTTTACGACCTNA

PB0194.1_Zbtb12_2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACKTTACAAC---
TATCATTAGAACGCT

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ACKTTACAAC---
---TTGCAACATN

PH0047.1_Hoxa11/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ACKTTACAAC----
NNGTTTTACGACTTTA